diff --git a/gemma.cc b/gemma.cc
index edc5dfd..1751ad5 100644
--- a/gemma.cc
+++ b/gemma.cc
@@ -666,12 +666,16 @@ void GenerateImpl(GemmaImpl<TConfig>& gemma, size_t max_tokens,
 
   size_t pos_gen_start = pos_offset;
   int token = prompt.at(pos_offset);
+  stream_token(token, 0);
   for (size_t generate_pos = 0;
        pos < max_tokens && generate_pos < max_generated_tokens;
        ++pos, ++pos_offset, ++generate_pos) {
     Transformer(token, pos, c_weights, activations, kv_cache, pool, inner_pool);
     float* final_activation = activations.x.data();
-    if (pos_offset >= prompt_size) {
+    // The condition below is always true if we are doing Prefill above.
+    // We keep it here for clarity so that the code is correct even if Prefill
+    // is disabled.
+    if (pos_offset >= prompt_size - 1) {
       PROFILER_ZONE("Gen.Embedding");
       // Generation phase
       MatVec<kVocabSize, TConfig::kModelDim>(
@@ -681,9 +685,14 @@ void GenerateImpl(GemmaImpl<TConfig>& gemma, size_t max_tokens,
       Softmax(activations.logits.data(), kVocabSize);
       token = SampleTopK<TConfig::kTopK>(activations.logits.data(), kVocabSize,
                                          gen, temperature, accept_token);
-    }
-    if (!stream_token(token, activations.logits[token])) {
-      token = EOS_ID;
+      if (!stream_token(token, activations.logits[token])) {
+        token = EOS_ID;
+      }
+    } else {
+      // We would take this branch if we were not doing Prefill but would
+      // process the tokens of the prompt one at a time.
+      token = prompt.at(pos_offset + 1);
+      stream_token(token, 0);
     }
     if (token == EOS_ID) {
       if (verbosity >= 2) {
diff --git a/run.cc b/run.cc
index 3f38031..46ac1ba 100644
--- a/run.cc
+++ b/run.cc
@@ -116,7 +116,8 @@ void ReplGemma(gcpp::Gemma& model, gcpp::KVCache& kv_cache,
                        verbosity](int token, float) {
     ++abs_pos;
     ++current_pos;
-    if (current_pos < prompt_size) {
+    // <= since position is incremented before
+    if (current_pos <= prompt_size) {
       std::cerr << "." << std::flush;
     } else if (token == gcpp::EOS_ID) {
       if (!args.multiturn) {